Publications

Takeshi Satoh

Original Paper

  1. Eri T, Kawahata K, Kanzaki T, Imamura M, Michishita K, Akahira L, Bannai E, Yoshikawa N, Kimura Y, Satoh T, Uematsu S, Tanaka H, Yamamoto K. Intestinal microbiota link lymphopenia to murine autoimmunity via PD-1+CXCR5-/dim B-helper T cell induction. Sci Rep. 2017 Apr 26;7:46037. doi: 10.1038/srep46037. PubMed PMID:28443628
  2. Lahaye X, Satoh T, Gentili M, Cerboni S, Silvin A, Conrad C, Ahmed-Belkacem A, Rodriguez EC, Guichou JF, Bosquet N, Piel M, Le Grand R, King MC, Pawlotsky JM, Manel N. Nuclear Envelope Protein SUN2 Promotes Cyclophilin-A-Dependent Steps of HIV Replication. Cell Rep. 2016 Apr 13. pii: S2211-1247(16)30363-1. doi: 10.1016/j.celrep.2016.03.074. PubMed PMID:27149839
  3. Gentili M, Kowal J, Tkach M, Satoh T, Lahaye X, Conrad C, Boyron M, Lombard B, Durand S, Kroemer G, Loew D, Dalod M, Théry C, Manel N. Transmission of innate immune signaling by packaging of cGAMP in viral particles. Science. 2015 Sep 11;349(6253):1232-6. doi: 10.1126/science.aab3628. PubMed PMID: 26229115.
  4. Touzot M, Grandclaudon M, Cappuccio A, Satoh T, Martinez-Cingolani C, Servant N, Manel N, Soumelis V. Combinatorial flexibility of cytokine function during human T helper cell differentiation. Nature Communications. 2014;5:3987. doi: 10.1038/ncomms4987. PubMed PMID: 24865484.
  5. Kuroki K, Wang J, Ose T, Yamaguchi M, Tabata S, Maita N, Nakamura S, Kajikawa M, Kogure A, Satoh T, Arase H, Maenaka K. Structural basis for simultaneous recognition of an O-glycan and its attached peptide of mucin family by immune receptor PILRalpha. Proceedings of the National Academy of Sciences of the United States of America. 2014;111(24):8877-82. doi: 10.1073/pnas.1324105111. PubMed PMID: 24889612; PMCID: 4066494.
  6. Lahaye X*, Satoh T*, Gentili M, Cerboni S, Conrad C, Hurbain I, El Marjou A, Lacabaratz C, Lelievre JD, Manel N. The capsids of HIV-1 and HIV-2 determine immune detection of the viral cDNA by the innate sensor cGAS in dendritic cells. Immunity. 2013;39(6):1132-42. doi: 10.1016/j.immuni.2013.11.002. PubMed PMID: 24269171.(*:Equal contribution)
  7. Satoh T, Smith A, Sarde A, Lu HC, Mian S, Trouillet C, Mufti G, Emile JF, Fraternali F, Donadieu J, Geissmann F. B-RAF mutant alleles associated with Langerhans cell histiocytosis, a granulomatous pediatric disease. PLoS one. 2012;7(4):e33891. doi: 10.1371/journal.pone.0033891. PubMed PMID: 22506009; PMCID: 3323620.
  8. Suenaga T, Satoh T, Somboonthum P, Kawaguchi Y, Mori Y, Arase H. Myelin-associated glycoprotein mediates membrane fusion and entry of neurotropic herpesviruses. Proceedings of the National Academy of Sciences of the United States of America. 2010;107(2):866-71. doi: 10.1073/pnas.0913351107. PubMed PMID: 20080767; PMCID: 2818916.
  9. Wang J, Fan Q, Satoh T, Arii J, Lanier LL, Spear PG, Kawaguchi Y, Arase H. Binding of herpes simplex virus glycoprotein B (gB) to paired immunoglobulin-like type 2 receptor alpha depends on specific sialylated O-linked glycans on gB. Journal of Virology. 2009;83(24):13042-5. doi: 10.1128/JVI.00792-09. PubMed PMID: 19812165; PMCID: 2786847.
  10. Fan Q, Lin E, Satoh T, Arase H, Spear PG. Differential effects on cell fusion activity of mutations in herpes simplex virus 1 glycoprotein B (gB) dependent on whether a gD receptor or a gB receptor is overexpressed. Journal of Virology. 2009;83(15):7384-90. doi: 10.1128/JVI.00087-09. PubMed PMID: 19457990; PMCID: 2708615.
  11. Wang J, Shiratori I, Satoh T, Lanier LL, Arase H. An essential role of sialylated O-linked sugar chains in the recognition of mouse CD99 by paired Ig-like type 2 receptor (PILR). Journal of Immunology. 2008;180(3):1686-93. PubMed PMID: 18209065; PMCID: 2577149.
  12. Satoh T, Arii J, Suenaga T, Wang J, Kogure A, Uehori J, Arase N, Shiratori I, Tanaka S, Kawaguchi Y, Spear P, Lanier L, Arase H. PILR alpha is a herpes simplex virus-1 entry coreceptor that associates with glycoprotein B. Cell. 2008;132(6):935-44. doi: 10.1016/j.cell.2008.01.043. PubMed PMID: WOS:000254273600013.
  13. Takagaki K, Shima H, Tanuma N, Nomura M, Satoh T, Watanabe M, Kikuchi K. Characterization of a novel low-molecular-mass dual specificity phosphatase-4 (LDP-4) expressed in brain. Molecular and Cellular Biochemistry. 2007;296(1-2):177-84. doi: 10.1007/s11010-006-9313-5. PubMed PMID: 17001450.
  14. Takagaki K, Satoh T, Tanuma N, Masuda K, Takekawa M, Shima H, Kikuchi K. Characterization of a novel low-molecular-mass dual-specificity phosphatase-3 (LDP-3) that enhances activation of JNK and p38. The Biochemical Journal. 2004;383(Pt. 3):447-55. doi: 10.1042/BJ20040498. PubMed PMID: 15281913; PMCID: 1133737.
  15. Sato T, Saito R, Jinushi T, Tsuji T, Matsuzaki J, Koda T, Nishimura S, Takeshima H, Nishimura T. IFN-gamma-induced SOCS-1 regulates STAT6-dependent eotaxin production triggered by IL-4 and TNF-alpha. Biochemical and Biophysical Research Communications. 2004;314(2):468-75. PubMed PMID: 14733929.
  16. Fujimura T, Chamoto K, Tsuji T, Sato T, Yokouchi H, Aiba S, Tagami H, Tanaka J, Imamura M, Togashi Y, Koda T, Nishimura T. Generation of leukemia-specific T-helper type 1 cells applicable to human leukemia cell-therapy. Immunology Letters. 2004;93(1):17-25. doi: 10.1016/j.imlet.2004.01.013. PubMed PMID: 15134894.
  17. Chamoto K, Tsuji T, Funamoto H, Kosaka A, Matsuzaki J, Sato T, Abe H, Fujio K, Yamamoto K, Kitamura T, Takeshima T, Togashi Y, Nishimura T. Potentiation of tumor eradication by adoptive immunotherapy with T-cell receptor gene-transduced T-helper type 1 cells. Cancer Research. 2004;64(1):386-90. PubMed PMID: 14729649.
  18. Sasaki K, Tsuji T, Jinushi T, Matsuzaki J, Sato T, Chamoto K, Togashi Y, Koda T, Nishimura T. Differential regulation of VLA-2 expression on Th1 and Th2 cells: a novel marker for the classification of Th subsets. International Immunology. 2003;15(6):701-10. PubMed PMID: 12750354.
  19. Chamoto K, Kosaka A, Tsuji T, Matsuzaki J, Sato T, Takeshima T, Iwakabe K, Togashi Y, Koda T, Nishimura T. Critical role of the Th1/Tc1 circuit for the generation of tumor-specific CTL during tumor eradication in vivo by Th1-cell therapy. Cancer Science. 2003;94(10):924-8. PubMed PMID: 14556668.
  20. Nakamura K, Tanoue K, Satoh T, Takekawa M, Watanabe M, Shima H, Kikuchi K. A novel low-molecular-mass dual-specificity phosphatase, LDP-2, with a naturally occurring substitution that affects substrate specificity. Journal of Biochemistry. 2002;132(3):463-70. PubMed PMID: 12204117.

Book chapters

  1. Satoh, T. and Manel, N. Gene transduction in human monocyte-derived dendritic cells using lentivirus vectors. Methods in Molecular Biology, 960:401-409.

Patent

  1. Arase Hisashi, Satoh Takeshi, Kawaguchi Yasushi : Inhibitor Of Herpesvirus Infection, Method For Inhibition Of Herpesvirus Infection, And Use Thereof (WO 2008084710 A1)

Yasumasa Kimura

Original Paper

  1. Eri T, Kawahata K, Kanzaki T, Imamura M, Michishita K, Akahira L, Bannai E, Yoshikawa N, Kimura Y, Satoh T, Uematsu S, Tanaka H, Yamamoto K. Intestinal microbiota link lymphopenia to murine autoimmunity via PD-1+CXCR5-/dim B-helper T cell induction. Sci Rep. 2017 Apr 26;7:46037. doi: 10.1038/srep46037. PubMed PMID:28443628
  2. Takase Y, Usui K, Shimizu K, Kimura Y, Ichihara T, Ohkawa T, Atsumi J, Enokida Y, Nakazawa S, Obayashi K, Ohtaki Y, Nagashima T, Mitani Y, Takeyoshi I. Highly sensitive detection of a HER2 12-base pair duplicated insertion mutation in lung cancer using the Eprobe-PCR method. PLoS one. 2017 Feb 2;12(2):e0171225. doi: 10.1371/journal.pone.0171225. PubMed PMID: 28152008.
  3. Kimura Y*, Soma T, Kasahara N, Delobel D, Hanami T, Tanaka Y, de Hoon MJ, Hayashizaki Y, Usui K, Harbers M. Edesign: Primer and Enhanced Internal Probe Design Tool for Quantitative PCR Experiments and Genotyping Assays. PLoS one. 2016;11(2):e0146950. doi: 10.1371/journal.pone.0146950. PubMed PMID: 26863543. (*:Corresponding author)
  4. Roy S, Guler R, Parihar SP, Schmeier S, Kaczkowski B, Nishimura H, Shin JW, Negishi Y, Ozturk M, Hurdayal R, Kubosaki A, Kimura Y, de Hoon MJ, Hayashizaki Y, Brombacher F, Suzuki H. Batf2/Irf1 Induces Inflammatory Responses in Classically Activated Macrophages, Lipopolysaccharides, and Mycobacterial Infection. J. Immunol. 2015;194(12):6035-44, doi: 10.4049/jimmunol.1402521. PubMed PMID: 25957166
  5. Atsumi J, Hanami T, Enokida Y, Ogawa H, Delobel D, Mitani Y, Kimura Y, Soma T, Tagami M, Takase Y, Ichihara T, Takeyoshi I, Usui K, Hayashizaki Y, Shimizu K. Eprobe-mediated screening system for somatic mutations in the KRAS locus. Oncol. Rep., 2015; 33(6), 2719–27. doi: 10.3892/or.2015.3883. PubMed PMID: 25823645.
  6. Hanami T, Delobel D, Kanamori H, Tanaka Y, Kimura Y, Nakasone A, Soma T, Hayashizaki Y, Usui K, Harbers M. Eprobe mediated real-time PCR monitoring and melting curve analysis. PLoS one. 2013;8(8):e70942. doi: 10.1371/journal.pone.0070942. PubMed PMID: 23951046; PMCID: 3737233.
  7. Enokida Y, Shimizu K, Atsumi J, Lezhava A, Tanaka Y, Kimura Y, Soma T, Hanami T, Kawai Y, Usui K, Okano Y, Kakegawa S, Ogawa H, Miyamae Y, Miyagi Y, Nakayama H, Ishikawa T, Hayashizaki Y, Takeyoshi I. Rapid detection of SNP (c.309T>G) in the MDM2 gene by the Duplex SmartAmp method. PLoS one. 2013;8(4):e60151. doi: 10.1371/journal.pone.0060151. PubMed PMID: 23565197; PMCID: 3614994.
  8. Kimura Y*, Hanami T, Tanaka Y, de Hoon MJ, Soma T, Harbers M, Lezhava A, Hayashizaki Y, Usui K. Effect of thiazole orange doubly labeled thymidine on DNA duplex formation. Biochemistry. 2012;51(31):6056-67. doi: 10.1021/bi300293d. PubMed PMID: 22765348. (*:Corresponding author)
  9. Kawai Y, Kimura Y, Lezhava A, Kanamori H, Usui K, Hanami T, Soma T, Morlighem JE, Saga S, Ishizu Y, Aoki S, Endo R, Oguchi-Katayama A, Kogo Y, Mitani Y, Ishidao T, Kawakami C, Kurata H, Furuya Y, Saito T, Okazaki N, Chikahira M, Hayashi E, Tsuruoka S, Toguchi T, Saito Y, Ban T, Izumi S, Uryu H, Kudo K, Sakai-Tagawa Y, Kawaoka Y, Hirai A, Hayashizaki Y, Ishikawa T. One-step detection of the 2009 pandemic influenza A(H1N1) virus by the RT-SmartAmp assay and its clinical validation. PLoS one. 2012;7(1):e30236. doi: 10.1371/journal.pone.0030236. PubMed PMID: 22295077; PMCID: 3266250.
  10. Kimura Y, de Hoon MJ, Aoki S, Ishizu Y, Kawai Y, Kogo Y, Daub CO, Lezhava A, Arner E, Hayashizaki Y. Optimization of turn-back primers in isothermal amplification. Nucleic Acids Research. 2011;39(9):e59. doi: 10.1093/nar/gkr041. PubMed PMID: 21310714; PMCID: 3089485.
  11. Azuma K, Lezhava A, Shimizu M, Kimura Y, Ishizu Y, Ishikawa T, Kamataki T, Hayashizaki Y, Yamazaki H. Direct genotyping of Cytochrome P450 2A6 whole gene deletion from human blood samples by the SmartAmp method. Clinica Chimica Acta; International Journal of Clinical Chemistry. 2011;412(13-14):1249-51. doi: 10.1016/j.cca.2011.03.017. PubMed PMID: 21420395.
  12. Tanaka Y, Kimura Y, Mitani Y, Kawai Y, Lezhava A, Noma S, Tagami M, Kawai J, Hayashizaki Y, Usui K. Effects of the turn-back primer on intermediate product generation in isothermal DNA amplification. BioTechniques. 2010;49(6):888-92. doi: 10.2144/000113566. PubMed PMID: 21143210.
  13. Tomaru Y, Nakanishi M, Miura H, Kimura Y, Ohkawa H, Ohta Y, Hayashizaki Y, Suzuki M. Identification of an inter-transcription factor regulatory network in human hepatoma cells by Matrix RNAi. Nucleic Acids Research. 2009;37(4):1049-60. doi: 10.1093/nar/gkn1028. PubMed PMID: 19129217; PMCID: 2651797.
  14. Mar JC, Kimura Y, Schroder K, Irvine KM, Hayashizaki Y, Suzuki H, Hume D, Quackenbush J. Data-driven normalization strategies for high-throughput quantitative RT-PCR. BMC Bioinformatics. 2009;10:110. doi: 10.1186/1471-2105-10-110. PubMed PMID: 19374774; PMCID: 2680405.
  15. Kimura Y, Oguchi-Katayama A, Kawai Y, Naito K, Mitani Y, Morlighem JE, Hayashizaki Y, Lezhava A. Tail variation of the folding primer affects the SmartAmp2 process differently. Biochemical and Biophysical Research Communications. 2009;383(4):455-9. doi: 10.1016/j.bbrc.2009.04.033. PubMed PMID: 19371726.
  16. Faulkner GJ, Kimura Y, Daub CO, Wani S, Plessy C, Irvine KM, Schroder K, Cloonan N, Steptoe AL, Lassmann T, Waki K, Hornig N, Arakawa T, Takahashi H, Kawai J, Forrest AR, Suzuki H, Hayashizaki Y, Hume DA, Orlando V, Grimmond SM, Carninci P. The regulated retrotransposon transcriptome of mammalian cells. Nature Genetics. 2009;41(5):563-71. doi: 10.1038/ng.368. PubMed PMID: 19377475.
  17. Consortium F, Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, Kanamori-Katayama M, Kubosaki A, Akalin A, Ando Y, Arner E, Asada M, Asahara H, Bailey T, Bajic VB, Bauer D, Beckhouse AG, Bertin N, Bjorkegren J, Brombacher F, Bulger E, Chalk AM, Chiba J, Cloonan N, Dawe A, Dostie J, Engstrom PG, Essack M, Faulkner GJ, Fink JL, Fredman D, Fujimori K, Furuno M, Gojobori T, Gough J, Grimmond SM, Gustafsson M, Hashimoto M, Hashimoto T, Hatakeyama M, Heinzel S, Hide W, Hofmann O, Hornquist M, Huminiecki L, Ikeo K, Imamoto N, Inoue S, Inoue Y, Ishihara R, Iwayanagi T, Jacobsen A, Kaur M, Kawaji H, Kerr MC, Kimura R, Kimura S, Kimura Y, Kitano H, Koga H, Kojima T, Kondo S, Konno T, Krogh A, Kruger A, Kumar A, Lenhard B, Lennartsson A, Lindow M, Lizio M, Macpherson C, Maeda N, Maher CA, Maqungo M, Mar J, Matigian NA, Matsuda H, Mattick JS, Meier S, Miyamoto S, Miyamoto-Sato E, Nakabayashi K, Nakachi Y, Nakano M, Nygaard S, Okayama T, Okazaki Y, Okuda-Yabukami H, Orlando V, Otomo J, Pachkov M, Petrovsky N, Plessy C, Quackenbush J, Radovanovic A, Rehli M, Saito R, Sandelin A, Schmeier S, Schonbach C, Schwartz AS, Semple CA, Sera M, Severin J, Shirahige K, Simons C, St Laurent G, Suzuki M, Suzuki T, Sweet MJ, Taft RJ, Takeda S, Takenaka Y, Tan K, Taylor MS, Teasdale RD, Tegner J, Teichmann S, Valen E, Wahlestedt C, Waki K, Waterhouse A, Wells CA, Winther O, Wu L, Yamaguchi K, Yanagawa H, Yasuda J, Zavolan M, Hume DA, Riken Omics Science C, Arakawa T, Fukuda S, Imamura K, Kai C, Kaiho A, Kawashima T, Kawazu C, Kitazume Y, Kojima M, Miura H, Murakami K, Murata M, Ninomiya N, Nishiyori H, Noma S, Ogawa C, Sano T, Simon C, Tagami M, Takahashi Y, Kawai J, Hayashizaki Y. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics. 2009;41(5):553-62. doi: 10.1038/ng.375. PubMed PMID: 19377474.

Patent

  1. Yoshihide Hayashizaki, Yasumasa Kimura, Kengo Usui, Yuki Tanaka, Yuki Kawai : Primer set, method for amplifying target nucleic acid sequence using same, and method for detecting mutated nucleic acid using same (WO 2013035875 A1)
  2. Yoshihide Hayashizaki, Takeshi HANAMI, Takahiro Soma, Yasumasa Kimura, Hajime Kanamori, Yasumasa Mitani : Nucleic acid probe, method for designing nucleic acid probe, and method for detecting target sequence (WO 2014013954 A1)